Source code for issm.thermal

import numpy as  np
from project3d import project3d
from fielddisplay import fielddisplay
from checkfield import checkfield
from WriteData import WriteData

[docs]class thermal(object): """ THERMAL class definition Usage: thermal=thermal(); """ def __init__(self): # {{{ self.spctemperature = float('NaN') self.penalty_threshold = 0 self.stabilization = 0 self.reltol = 0 self.maxiter = 0 self.penalty_lock = 0 self.penalty_factor = 0 self.isenthalpy = 0 self.isdynamicbasalspc = 0; self.fe = 'P1'; self.requested_outputs = [] #set defaults self.setdefaultparameters() #}}} def __repr__(self): # {{{ string=' Thermal solution parameters:' string="%s\n%s"%(string,fielddisplay(self,'spctemperature','temperature constraints (NaN means no constraint) [K]')) string="%s\n%s"%(string,fielddisplay(self,'stabilization','0: no, 1: artificial_diffusivity, 2: SUPG')) string="%s\n%s"%(string,fielddisplay(self,'maxiter','maximum number of non linear iterations')) string="%s\n%s"%(string,fielddisplay(self,'reltol','relative tolerance criterion')) string="%s\n%s"%(string,fielddisplay(self,'penalty_lock','stabilize unstable thermal constraints that keep zigzagging after n iteration (default is 0, no stabilization)')) string="%s\n%s"%(string,fielddisplay(self,'penalty_threshold','threshold to declare convergence of thermal solution (default is 0)')) string="%s\n%s"%(string,fielddisplay(self,'isenthalpy','use an enthalpy formulation to include temperate ice (default is 0)')) string="%s\n%s"%(string,fielddisplay(self,'isdynamicbasalspc','enable dynamic setting of basal forcing. required for enthalpy formulation (default is 0)')) string="%s\n%s"%(string,fielddisplay(self,'requested_outputs','additional outputs requested')) return string #}}}
[docs] def extrude(self,md): # {{{ self.spctemperature=project3d(md,'vector',self.spctemperature,'type','node','layer',md.mesh.numberoflayers,'padding',np.nan) if isinstance(md.initialization.temperature,np.ndarray) and np.size(md.initialization.temperature,axis=0)==md.mesh.numberofvertices: self.spctemperature=float('NaN')*np.ones((md.mesh.numberofvertices)) pos=np.where(md.mesh.vertexonsurface)[0] self.spctemperature[pos]=md.initialization.temperature[pos] #impose observed temperature on surface return self
#}}}
[docs] def defaultoutputs(self,md): # {{{ if self.isenthalpy: return ['Enthalpy','Temperature','Waterfraction','Watercolumn','BasalforcingsGroundediceMeltingRate'] else: return ['Temperature','BasalforcingsGroundediceMeltingRate']
#}}}
[docs] def setdefaultparameters(self): # {{{ #Number of unstable constraints acceptable self.penalty_threshold=0 #Type of stabilization used self.stabilization=1 #Relative tolerance for the enthalpy convergence self.reltol=0.01 #Maximum number of iterations self.maxiter=100 #factor used to compute the values of the penalties: kappa=max(stiffness matrix)*10^penalty_factor self.penalty_factor=3 #Should we use cold ice (default) or enthalpy formulation self.isenthalpy=0 #will basal boundary conditions be set dynamically self.isdynamicbasalspc=0 #Finite element interpolation self.fe='P1' #default output self.requested_outputs=['default'] return self
#}}}
[docs] def checkconsistency(self,md,solution,analyses): # {{{ #Early return if ('ThermalAnalysis' not in analyses and 'EnthalpyAnalysis' not in analyses) or (solution=='TransientSolution' and not md.transient.isthermal): return md md = checkfield(md,'fieldname','thermal.stabilization','numel',[1],'values',[0,1,2]) md = checkfield(md,'fieldname','thermal.spctemperature','Inf',1,'timeseries',1) md = checkfield(md,'fieldname','thermal.requested_outputs','stringrow',1) if 'EnthalpyAnalysis' in analyses and md.thermal.isenthalpy and md.mesh.dimension()==3: pos=np.where(~np.isnan(md.thermal.spctemperature[0:md.mesh.numberofvertices])) try: spccol=np.size(md.thermal.spctemperature,1) except IndexError: spccol=1 replicate=np.tile(md.geometry.surface-md.mesh.z,(spccol)) control=md.materials.meltingpoint-md.materials.beta*md.materials.rho_ice*md.constants.g*replicate md = checkfield(md,'fieldname','thermal.spctemperature','field',md.thermal.spctemperature[pos],'<=',control[pos],'message',"spctemperature should be below the adjusted melting point") md = checkfield(md,'fieldname','thermal.isenthalpy','numel',[1],'values',[0,1]) md = checkfield(md,'fieldname','thermal.isdynamicbasalspc','numel',[1],'values',[0,1]); if(md.thermal.isenthalpy): if np.isnan(md.stressbalance.reltol): md.checkmessage("for a steadystate computation, thermal.reltol (relative convergence criterion) must be defined!") md = checkfield(md,'fieldname','thermal.reltol','>',0.,'message',"reltol must be larger than zero"); return md
# }}}
[docs] def marshall(self,prefix,md,fid): # {{{ WriteData(fid,prefix,'object',self,'fieldname','spctemperature','format','DoubleMat','mattype',1,'timeserieslength',md.mesh.numberofvertices+1,'yts',md.constants.yts) WriteData(fid,prefix,'object',self,'fieldname','penalty_threshold','format','Integer') WriteData(fid,prefix,'object',self,'fieldname','stabilization','format','Integer') WriteData(fid,prefix,'object',self,'fieldname','reltol','format','Double'); WriteData(fid,prefix,'object',self,'fieldname','maxiter','format','Integer') WriteData(fid,prefix,'object',self,'fieldname','penalty_lock','format','Integer') WriteData(fid,prefix,'object',self,'fieldname','penalty_factor','format','Double') WriteData(fid,prefix,'object',self,'fieldname','isenthalpy','format','Boolean') WriteData(fid,prefix,'object',self,'fieldname','fe','format','String'); WriteData(fid,prefix,'object',self,'fieldname','isdynamicbasalspc','format','Boolean'); #process requested outputs outputs = self.requested_outputs indices = [i for i, x in enumerate(outputs) if x == 'default'] if len(indices) > 0: outputscopy=outputs[0:max(0,indices[0]-1)]+self.defaultoutputs(md)+outputs[indices[0]+1:] outputs =outputscopy WriteData(fid,prefix,'data',outputs,'name','md.thermal.requested_outputs','format','StringArray')
# }}}